S.M. Smith, M. Jenkinson, M.W. Woolrich, C.F. Beckmann, T.E.J. Behrens, H. Johansen-Berg, P.R. Bannister, M. De Luca, I. Drobnjak, D.E. Flitney, R. Niazy, J. Saunders, J. Vickers, Y. Zhang, N. De Stefano, J.M. Brady, and P.M. Matthews. Advances in functional and structural MR image analysis and implementation as FSL. NeuroImage, 23(S1):208-219, 2004
PMID: 15501092FMRIregistrationlinearhttp://www.fmrib.ox.ac.uk/fsl/flirt/index.htmlhdrpipeline://cranium.loni.ucla.edu//ifs/faculty/narr/schizo/family_study/LPBA40/IMAGES_WM/lpba40.air.icbm452w5.brain.avg.imghdrApply XFMApply XFMcharshortintfloatdoublemutualinfocorrationormcorrnormmileastsqmutualinfocorrationormcorrnormmileastsqquaternioneulertrilinearnearestneighboursinc67912Padding SizeInitial Matrix FileInitial Matrix FileApply XFMhdrhdrrectangularhanningblackmanhttp://www.fmrib.ox.ac.uk/fsl/fsl/licence.html
LICENCE
FMRIB Software Library, Release 4.1 (c) 2008, The University of Oxford
(the "Software")
The Software remains the property of the University of Oxford ("the
University").
The Software is distributed "AS IS" under this Licence solely for
non-commercial use in the hope that it will be useful, but in order
that the University as a charitable foundation protects its assets for
the benefit of its educational and research purposes, the University
makes clear that no condition is made or to be implied, nor is any
warranty given or to be implied, as to the accuracy of the Software,
or that it will be suitable for any particular purpose or for use
under any specific conditions. Furthermore, the University disclaims
all responsibility for the use which is made of the Software. It
further disclaims any liability for the outcomes arising from using
the Software.
The Licensee agrees to indemnify the University and hold the
University harmless from and against any and all claims, damages and
liabilities asserted by third parties (including claims for
negligence) which arise directly or indirectly from the use of the
Software or the sale of any products based on the Software.
No part of the Software may be reproduced, modified, transmitted or
transferred in any form or by any means, electronic or mechanical,
without the express permission of the University. The permission of
the University is not required if the said reproduction, modification,
transmission or transference is done without financial return, the
conditions of this Licence are imposed upon the receiver of the
product, and all original and amended source code is included in any
transmitted product. You may be held legally responsible for any
copyright infringement that is caused or encouraged by your failure to
abide by these terms and conditions.
You are not permitted under this Licence to use this Software
commercially. Use for which any financial return is received shall be
defined as commercial use, and includes (1) integration of all or part
of the source code or the Software into a product for sale or license
by or on behalf of Licensee to third parties or (2) use of the
Software or any derivative of it for research with the final aim of
developing software products for sale or license to a third party or
(3) use of the Software or any derivative of it for research with the
final aim of developing non-software products for sale or license to a
third party, or (4) use of the Software to provide any service to an
external organisation for which payment is received. If you are
interested in using the Software commercially, please contact Isis
Innovation Limited ("Isis"), the technology transfer company of the
University, to negotiate a licence. Contact details are:
innovation@isis.ox.ac.uk quoting reference BS/3497.S.M. Smith, M. Jenkinson, M.W. Woolrich, C.F. Beckmann, T.E.J. Behrens, H. Johansen-Berg, P.R. Bannister, M. De Luca, I. Drobnjak, D.E. Flitney, R. Niazy, J. Saunders, J. Vickers, Y. Zhang, N. De Stefano, J.M. Brady, and P.M. Matthews. Advances in functional and structural MR image analysis and implementation as FSL. NeuroImage, 23(S1):208-219, 2004
PMID: 15501092FMRIregistrationlinearhttp://www.fmrib.ox.ac.uk/fsl/flirt/index.htmlhdrhdrApply XFMApply XFMcharshortintfloatdoublemutualinfocorrationormcorrnormmileastsqmutualinfocorrationormcorrnormmileastsqquaternioneulertrilinearnearestneighboursinc67912Padding SizeInitial Matrix FileInitial Matrix FileApply XFMhdrhdrrectangularhanningblackmanhttp://www.fmrib.ox.ac.uk/fsl/fsl/licence.html
LICENCE
FMRIB Software Library, Release 4.1 (c) 2008, The University of Oxford
(the "Software")
The Software remains the property of the University of Oxford ("the
University").
The Software is distributed "AS IS" under this Licence solely for
non-commercial use in the hope that it will be useful, but in order
that the University as a charitable foundation protects its assets for
the benefit of its educational and research purposes, the University
makes clear that no condition is made or to be implied, nor is any
warranty given or to be implied, as to the accuracy of the Software,
or that it will be suitable for any particular purpose or for use
under any specific conditions. Furthermore, the University disclaims
all responsibility for the use which is made of the Software. It
further disclaims any liability for the outcomes arising from using
the Software.
The Licensee agrees to indemnify the University and hold the
University harmless from and against any and all claims, damages and
liabilities asserted by third parties (including claims for
negligence) which arise directly or indirectly from the use of the
Software or the sale of any products based on the Software.
No part of the Software may be reproduced, modified, transmitted or
transferred in any form or by any means, electronic or mechanical,
without the express permission of the University. The permission of
the University is not required if the said reproduction, modification,
transmission or transference is done without financial return, the
conditions of this Licence are imposed upon the receiver of the
product, and all original and amended source code is included in any
transmitted product. You may be held legally responsible for any
copyright infringement that is caused or encouraged by your failure to
abide by these terms and conditions.
You are not permitted under this Licence to use this Software
commercially. Use for which any financial return is received shall be
defined as commercial use, and includes (1) integration of all or part
of the source code or the Software into a product for sale or license
by or on behalf of Licensee to third parties or (2) use of the
Software or any derivative of it for research with the final aim of
developing software products for sale or license to a third party or
(3) use of the Software or any derivative of it for research with the
final aim of developing non-software products for sale or license to a
third party, or (4) use of the Software to provide any service to an
external organisation for which payment is received. If you are
interested in using the Software commercially, please contact Isis
Innovation Limited ("Isis"), the technology transfer company of the
University, to negotiate a licence. Contact details are:
innovation@isis.ox.ac.uk quoting reference BS/3497.Woods, R.P., Grafton, S.T., Holmes, C.J., Cherry, S.R., and Mazziotta, J.C. (1998a). Automated image registration: I. General methods and intrasubject, intramodality validation. J Comput Assist Tomogr V22, 139-152.
PMID: 9448779Woods, R.P., Grafton, S.T., Watson, J.D., Sicotte, N.L., and Mazziotta, J.C. (1998b). Automated image registration: II. Intersubject validation of linear and nonlinear models. J Comput Assist Tomogr 22, 153-165.
PMID: 9448780rotatemirror imagehttp://bishopw.loni.ucla.edu/AIR5/reorient.htmlhdrhttp://www.loni.ucla.edu/Software/license.php
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* Permission is granted to use this software without charge for non-commercial research purposes only.
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* You agree to comply with LONI's Trademark Usage Requirements, as modified from time to time, described in the "Use of Materials Limitations" section of the LONI Terms of Use Agreement. Except as expressly provided in this License, you are granted no rights in or to any LONI trademarks now or hereafter used or licensed by LONI.
* All Technology and technical data delivered under this Agreement are subject to US export control laws and may be subject to export or import regulations in other countries. You agree to comply strictly with all such laws and regulations and acknowledge that you have the responsibility to obtain such licenses to export, re-export, or import as may be required after delivery to you.S.M. Smith, M. Jenkinson, M.W. Woolrich, C.F. Beckmann, T.E.J. Behrens, H. Johansen-Berg, P.R. Bannister, M. De Luca, I. Drobnjak, D.E. Flitney, R. Niazy, J. Saunders, J. Vickers, Y. Zhang, N. De Stefano, J.M. Brady, and P.M. Matthews. Advances in functional and structural MR image analysis and implementation as FSL. NeuroImage, 23(S1):208-219, 2004
PMID: 15501092Converteranalyzeniftihttp://www.fmrib.ox.ac.uk/fsl/avwutils/index.htmlANALYZENIFTINIFTI_PAIRANALYZE_GZNIFTI_GZNIFTI_PAIR_GZANALYZEhdrDOI: 10.1016/S1361-8415(01)00036-6DOI: 10.1007/s10586-005-4092-4DOI: 10.1093/bioinformatics/bth361DOI: 10.1002/cpe.993analyzemincconversionhttp://www.bic.mni.mcgill.ca/software/hdrhttp://www.bic.mni.mcgill.ca/ServicesSoftware/HomePage
Licensing
The MINC package itself and most of the associated tools are licensed under a modified BSD license. The MINC license is shown below but be aware that some packages are released under differing licences such as the GPL. Check the COPYING file in the chosen package for details.
Copyright 1993-2000,
McConnell Brain Imaging Centre
Montreal Neurological Institute
McGill University.
Permission to use, copy, modify, and distribute this software and its
documentation for any purpose and without fee is hereby granted,
provided that the above copyright notice appear in all copies. The
author and McGill University make no representations about the
suitability of this software for any purpose. It is provided "as is"
without express or implied 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PMID: 15501092manipulationmathematicalhttp://www.fmrib.ox.ac.uk/fsl/avwutils/index.htmlhdr5004D Noise OnlyAROC-threshROCROChttp://www.fmrib.ox.ac.uk/fsl/fsl/licence.html
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interested in using the Software commercially, please contact Isis
Innovation Limited ("Isis"), the technology transfer company of the
University, to negotiate a licence. Contact details are:
innovation@isis.ox.ac.uk quoting reference BS/3497.1//idaxs/project/subject/subjectSexValue//idaxs/project/subject/visit/assessment[@name='CDR']/component[@name='CDR Total Score']/assessmentScore[@attribute='CDGLOBAL']//idaxs/project/subject/subjectIdentifierValue//idaxs/project/subject/study/weightKg//idaxs/project/subject/visit/assessment[@name='MMSE']/component[@name='MMSE Total Score']/assessmentScore[@attribute='MMSCORE']