Applied Neurobiological Imaging, Dr. Katherine L. Narr

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Dicom to analyze.img
Conversion of Dicom files into a analyze.img

Dicom to Analyze

Written by Owen Phillips . Email email ophillip at loni dot ucla dot edu if you have any questions.

There are a couple of options for converting dicom data into a useable image format. For the Depression ECT project, use /ifs/woods/AIR/dicom2analyze and the script */narr/schizo/DEPRESSION/SCRIPTS/Processor.csh. For the Processor.csh script, you just need to change the subject ID within the foreach loop.

Siemenstoanalyze.jar file.

  1. Download Siemens to analyze.jar.
  2. You can run SiemensToAnalyze.jar locally or on or
  3. First ssh -X
  4. /usr/java2v14/bin/java -Xmx400000000 -jar SiemensToAnalyze.jar -recursive -target analyze_source -input [directory]
  5. Note, if you are part of the Narr group, you don't have to download the .jar file. Instead use, ~narr/SiemensToAnalyze.jar





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